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Substrate free cyanobacterial CYP120A1

Analyse Substrate free cyanobacterial CYP120A1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2VE4
Type: protein
Length: 863 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative cytochrome P450 120
EC: 1.14.-.-
UniProt: Q59990
Ligands: HEM
Pockets: 8 · best druggability 0.84

Structure

x-ray diffraction · 2 distinct chains · 51% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative cytochrome P450 120 (EC 1.14.-.-)	protein	431	52% helix, 10% strand	Q59990
B	Putative cytochrome P450 120 (EC 1.14.-.-)	protein	432	50% helix, 12% strand	Q59990

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

8 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1071	0.84	0.85	86	HEM
2	1090	0.83	0.84	86	HEM
3	120	0.45	0.78	15	empty
4	79	0.45	0.81	16	empty
5	95	0.43	0.78	15	empty

Interfaces

1 interface between chains.

A–B · 145 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

2VE4 · Substrate free cyanobacterial CYP120A1 · the same entry in another collection · chain A against A, TM-score 1.00
Q59990 · AlphaFold monomer V2.0 prediction for putative cytochrome P450 120 (Q59990) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q59990
Elsewhere: RCSB PDB 2VE4 · PDBe 2VE4 · UniProt Q59990

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