Research workbench
Structure of the murray valley encephalitis virus RNA helicase to 1. 9A resolution
Analyse Structure of the murray valley encephalitis virus RNA helicase to 1. 9A… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2V8O
- Type
- protein
- Length
- 429 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flavivirin protease NS3
- EC
- 3.4.21.91
- UniProt
- P05769
- Pockets
- 4 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Flavivirin protease NS3 (EC 3.4.21.91) | protein | 429 | 34% helix, 16% strand | P05769 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1143 | 0.83 | 0.84 | 95 | empty |
| 2 | 321 | 0.67 | 0.82 | 44 | empty |
| 3 | 51 | 0.53 | 0.88 | 11 | empty |
| 4 | 62 | 0.32 | 0.76 | 20 | empty |
Compared structures
- 2V8O · Structure of the Murray Valley encephalitis virus RNA helicase to 1. 9A resolution · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P05769
- Elsewhere: RCSB PDB 2V8O · PDBe 2V8O · UniProt P05769
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