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Mouse profilin iia in complex with the proline-rich domain of vasp

Analyse Mouse profilin iia in complex with the proline-rich domain of vasp in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
2V8C
Type
protein
Length
152 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Profilin-2; Vasodilator-stimulated phosphoprotein
UniProt
Q3V171, P70460
Ligands
NA, SO4

Structure

x-ray diffraction · 2 distinct chains · 28% helix, 29% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AProfilin-2protein13931% helix, 32% strandQ3V171
CVasodilator-stimulated phosphoproteinprotein130% helix, 0% strandP70460

Ligands and binding sites

  • NA · Sodium ion · metal · chains A
  • SO4 · Sulfate ion · ion · 3 copies · chains A
  • IPA · Isopropyl alcohol · additive · 2 copies · chains A
  • GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

  • A–C · 531 Ų buried · 7 hydrogen bonds · protein-protein

Compared structures

  • 2V8C · Mouse Profilin IIa in complex with the proline-rich domain of VASP · the same entry in another collection · chain A against A, TM-score 1.00
  • P70460 · AlphaFold monomer V2.0 prediction for vasodilator-stimulated phosphoprotein (P70460) · a predicted model of the same protein · chain C against A, TM-score 0.35

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