Research workbench
Crystal structure of the molecular chaperone dnak from geobacillus kaustophilus HTA426 in post-ATP hydrolysis state
Analyse Crystal structure of the molecular chaperone dnak from geobacillus kaustophilus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2V7Y
- Type
- protein
- Length
- 504 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chaperone protein dnak
- UniProt
- Q5KWZ7
- Ligands
- ADP, MG, PO4
- Pockets
- 3 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chaperone protein dnak | protein | 504 | 34% helix, 33% strand | Q5KWZ7 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · chains A
- MG · Magnesium ion · metal · chains A
- PO4 · Phosphate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 539 | 0.74 | 0.82 | 65 | ADP, PO4, MG |
| 2 | 80 | 0.43 | 0.80 | 21 | empty |
| 3 | 98 | 0.42 | 0.77 | 16 | empty |
Compared structures
- 2V7Y · Crystal structure of the molecular chaperone DnaK from Geobacillus kaustophilus HTA426 in… · the same entry in another collection · chain A against A, TM-score 1.00
- Q5KWZ7 · AlphaFold monomer V2.0 prediction for chaperone protein dnak (Q5KWZ7) · a predicted model of the same protein · chain A against A, TM-score 0.65
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5KWZ7
- Elsewhere: RCSB PDB 2V7Y · PDBe 2V7Y · UniProt Q5KWZ7
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.