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14-3-3 protein zeta in complex with THR758 phosphorylated integrin BETA2 peptide

Analyse 14-3-3 protein zeta in complex with THR758 phosphorylated integrin BETA2 peptide in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2V7D
Type: protein
Length: 935 residues
Chains: 8
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 14-3-3 protein ZETA/DELTA; Integrin beta chain, beta 2 variant
UniProt: P63103, Q53HS5
Pockets: 14 · best druggability 0.72

Structure

x-ray diffraction · 5 distinct chains · 78% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	14-3-3 protein ZETA/DELTA	protein	228	77% helix, 0% strand	P63103
B	14-3-3 protein ZETA/DELTA	protein	226	79% helix, 0% strand	P63103
C	14-3-3 protein ZETA/DELTA	protein	226	79% helix, 0% strand	P63103
D	14-3-3 protein ZETA/DELTA	protein	227	78% helix, 0% strand	P63103
P, Q, R, S	Integrin beta chain, beta 2 variant	protein	7	0% helix, 0% strand	Q53HS5

Pockets

14 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	800	0.72	0.78	78	empty
2	374	0.62	0.78	39	empty
3	311	0.60	0.78	38	empty
4	181	0.55	0.79	24	empty
5	329	0.54	0.75	26	empty

Interfaces

8 interfaces between chains.

C–D · 1038 Å² buried · 16 hydrogen bonds · protein-protein
A–B · 1035 Å² buried · 16 hydrogen bonds · protein-protein
B–C · 584 Å² buried · 6 hydrogen bonds · protein-protein
A–D · 583 Å² buried · 5 hydrogen bonds · protein-protein
C–R · 459 Å² buried · 14 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 modified (phosphorylation).

Compared structures

2V7D · 14-3-3 protein zeta in complex with Thr758 phosphorylated integrin beta2 peptide · the same entry in another collection · chain S against S, TM-score 1.00
P63103 · AlphaFold monomer V2.0 prediction for 14-3-3 protein ZETA/DELTA (P63103) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P63103
Every structure of UniProt Q53HS5
Elsewhere: RCSB PDB 2V7D · PDBe 2V7D · UniProt P63103 · UniProt Q53HS5

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