Research workbench
Serendipitous discovery and X-ray structure of a human phosphate binding apolipoprotein
Analyse Serendipitous discovery and X-ray structure of a human phosphate binding… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2V3Q
- Type
- protein
- Length
- 376 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Human phosphate binding protein
- UniProt
- P85173
- Ligands
- PO4
- Pockets
- 2 · best druggability 0.34
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Human phosphate binding protein | protein | 376 | 34% helix, 19% strand | P85173 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · chains A
- EDO · 1,2-ethanediol · additive · 12 copies · chains A
- GOL · Glycerol · additive · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 68 | 0.34 | 0.76 | 19 | empty |
| 2 | 54 | 0.30 | 0.75 | 16 | GOL |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 2V3Q · Serendipitous discovery and X-ray structure of a human phosphate binding apolipoprotein · the same entry in another collection · chain A against A, TM-score 1.00
- P85173 · AlphaFold monomer V2.0 prediction for phosphate-binding protein (P85173) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P85173
- Elsewhere: RCSB PDB 2V3Q · PDBe 2V3Q · UniProt P85173
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