Research workbench
Crystal structure of renin with inhibitor 8
Analyse Crystal structure of renin with inhibitor 8 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2V12
- Type
- protein
- Length
- 664 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Renin
- EC
- 3.4.23.15
- UniProt
- P00797
- Ligands
- C39
- Pockets
- 4 · best druggability 0.81
Structure
x-ray diffraction · 2 distinct chains · 14% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C | Renin (EC 3.4.23.15) | protein | 333 | 13% helix, 44% strand | P00797 |
| O | Renin (EC 3.4.23.15) | protein | 331 | 16% helix, 44% strand | P00797 |
Ligands and binding sites
- C39 · N-[(2S,4S,5S,7R)-4-amino-8-(butylamino)-5-hydroxy-7-methyl-2-(1-methylethyl)-8-oxooctyl]-2-(3-methoxypropoxy)benzamide · ligand · 2 copies · chains C, O
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 936 | 0.81 | 0.83 | 85 | empty |
| 2 | 561 | 0.75 | 0.82 | 42 | C39 |
| 3 | 454 | 0.72 | 0.82 | 43 | C39 |
| 4 | 173 | 0.49 | 0.77 | 24 | empty |
Interfaces
1 interface between chains.
- C–O · 731 Ų buried · 10 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 2V12 · Crystal Structure of Renin with Inhibitor 8 · the same entry in another collection · chain O against O, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00797
- Elsewhere: RCSB PDB 2V12 · PDBe 2V12 · UniProt P00797
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