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Crystal structure of choline binding protein F from streptococcus pneumoniae. crystal form II.
Analyse Crystal structure of choline binding protein F from streptococcus pneumoniae.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2V05
- Type
- protein
- Length
- 298 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Choline binding protein F
- UniProt
- Q8DR52
- Ligands
- CHT
- Pockets
- 1 · best druggability 0.38
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Choline binding protein F | protein | 298 | 0% helix, 45% strand | Q8DR52 |
Ligands and binding sites
- CHT · Choline ion · ligand · 7 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 70 | 0.38 | 0.78 | 16 | empty |
Compared structures
- 2V05 · Crystal structure of choline binding protein F from streptococcus pneumoniae. crystal… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DR52
- Elsewhere: RCSB PDB 2V05 · PDBe 2V05 · UniProt Q8DR52
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