Research workbench
Ttgr in complex with quercetin
Analyse Ttgr in complex with quercetin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2UXH
- Type
- protein
- Length
- 411 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hth-type transcriptional regulator ttgr
- UniProt
- Q9AIU0
- Ligands
- QUE
- Pockets
- 3 · best druggability 0.82
Structure
x-ray diffraction · 2 distinct chains · 73% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hth-type transcriptional regulator ttgr | protein | 206 | 76% helix, 1% strand | Q9AIU0 |
| B | Hth-type transcriptional regulator ttgr | protein | 205 | 69% helix, 2% strand | Q9AIU0 |
Ligands and binding sites
- QUE · 3,5,7,3',4'-pentahydroxyflavone · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 525 | 0.82 | 0.88 | 42 | QUE |
| 2 | 536 | 0.82 | 0.88 | 47 | QUE |
| 3 | 68 | 0.31 | 0.74 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 2234 Ų buried · 30 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9AIU0
- Elsewhere: RCSB PDB 2UXH · PDBe 2UXH · UniProt Q9AIU0
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