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Human serum albumin complexed with dodecanoic acid (lauric acid)

Analyse Human serum albumin complexed with dodecanoic acid (lauric acid) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1E7F
Type: protein
Length: 582 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Serum albumin
UniProt: P02768
Ligands: DAO
Pockets: 7 · best druggability 0.86

Structure

x-ray diffraction · 1 distinct chain · 72% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Serum albumin	protein	582	72% helix, 0% strand	P02768

Ligands and binding sites

DAO · Lauric acid · ligand · 8 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

7 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	595	0.86	0.91	66	DAO
2	305	0.81	0.91	33	DAO
3	380	0.81	0.90	47	DAO
4	423	0.73	0.83	36	DAO
5	205	0.69	0.86	32	DAO

Modifications

Observed in the structure: 17 disulfide (disulfide).

Compared structures

1E7F · Human serum albumin complexed with dodecanoic acid (lauric acid) · the same entry in another collection · chain A against A, TM-score 1.00
P02768 · AlphaFold monomer V2.0 prediction for albumin (P02768) · a predicted model of the same protein · chain A against A, TM-score 0.85

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02768
Elsewhere: RCSB PDB 1E7F · PDBe 1E7F · UniProt P02768

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