Research workbench

Refined solution structure of the first RNA recognition motif domain in CPEB3

Analyse Refined solution structure of the first RNA recognition motif domain in CPEB3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2RUG
Type: protein
Length: 114 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytoplasmic polyadenylation element-binding protein 3
UniProt: Q8NE35
Pockets: 1 · best druggability 0.43

Structure

solution nmr · 1 distinct chain · 24% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytoplasmic polyadenylation element-binding protein 3	protein	114	24% helix, 27% strand	Q8NE35

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	153	0.43	0.75	20	empty

Compared structures

2RUG · Refined solution structure of the first RNA recognition motif domain in CPEB3 · the same entry in another collection · chain A against A, TM-score 1.00
Q8NE35 · AlphaFold monomer V2.0 prediction for cytoplasmic polyadenylation element-binding protein… · a predicted model of the same protein · chain A against A, TM-score 0.81

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8NE35
Elsewhere: RCSB PDB 2RUG · PDBe 2RUG · UniProt Q8NE35

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.