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Dnat C-terminal domain

Analyse Dnat C-terminal domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2RU8
Type: protein
Length: 92 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Primosomal protein 1
UniProt: P0A8J2
Pockets: 3 · best druggability 0.52

Structure

solution nmr · 1 distinct chain · 46% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Primosomal protein 1	protein	92	46% helix, 2% strand	P0A8J2

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	202	0.52	0.77	33	empty
2	60	0.39	0.79	15	empty
3	52	0.31	0.76	13	empty

Compared structures

2RU8 · DnaT C-terminal domain · the same entry in another collection · chain A against A, TM-score 1.00
P0A8J2 · AlphaFold monomer V2.0 prediction for primosomal protein 1 (P0A8J2) · a predicted model of the same protein · chain A against A, TM-score 0.58

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0A8J2
Elsewhere: RCSB PDB 2RU8 · PDBe 2RU8 · UniProt P0A8J2

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