Research workbench
Refined structure of RNA aptamer in complex with the partial binding peptide of prion protein
Analyse Refined structure of RNA aptamer in complex with the partial binding peptide of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2RU7
- Type
- protein + RNA
- Length
- 48 residues
- Chains
- 4
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA_(5'-R(*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*A)-3'); P16 peptide from major prion protein
- UniProt
- P10279
Structure
solution nmr · 2 distinct chains · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | RNA_(5'-R(*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*A)-3') | rna | 12 | — | — |
| C, D | P16 peptide from major prion protein | protein | 12 | 0% helix, 0% strand | P10279 |
Interfaces
3 interfaces between chains.
- A–B · 702 Ų buried · 30 hydrogen bonds · nucleic-nucleic
- A–C · 490 Ų buried · 13 hydrogen bonds · protein-nucleic
- B–D · 420 Ų buried · 15 hydrogen bonds · protein-nucleic
Compared structures
- 2RU7 · Refined structure of RNA aptamer in complex with the partial binding peptide of prion… · the same entry in another collection · chain D against D, TM-score 1.00
- P10279 · AlphaFold monomer V2.0 prediction for major prion protein (P10279) · a predicted model of the same protein · chain C against A, TM-score 0.32
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P10279
- Elsewhere: RCSB PDB 2RU7 · PDBe 2RU7 · UniProt P10279
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