Research workbench
Designed armadillo repeat protein self-assembled complex (YIIM2-maii)
Analyse Designed armadillo repeat protein self-assembled complex (YIIM2-maii) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2RU4
- Type
- protein
- Length
- 199 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Armadillo repeat protein, N-terminal fragment, YIIM2; Armadillo repeat protein…
- Pockets
- 1 · best druggability 0.42
Structure
solution nmr · 2 distinct chains · 59% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Armadillo repeat protein, N-terminal fragment, YIIM2 | protein | 115 | 54% helix, 0% strand | — |
| B | Armadillo repeat protein, C-terminal fragment, maii | protein | 84 | 67% helix, 0% strand | — |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 103 | 0.42 | 0.77 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 1331 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
- 2RU4 · Designed Armadillo Repeat Protein Self-ASsembled Complex (YIIM2-MAII) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2RU4 · PDBe 2RU4
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