Research workbench
Crystal structure of udp-N-acetylglucosamine enolpyruvyl transferase from haemophilus influenzae in complex with udp-N-acetylglucosamine
Analyse Crystal structure of udp-N-acetylglucosamine enolpyruvyl transferase from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2RL1
- Type
- protein
- Length
- 420 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Udp-N-acetylglucosamine 1- carboxyvinyltransferase
- EC
- 2.5.1.7
- UniProt
- P45025
- Ligands
- UD1, SO4
- Pockets
- 2 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Udp-N-acetylglucosamine 1- carboxyvinyltransferase (EC 2.5.1.7) | protein | 420 | 32% helix, 27% strand | P45025 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 567 | 0.81 | 0.87 | 51 | SO4, UD1 |
| 2 | 79 | 0.38 | 0.77 | 15 | empty |
Compared structures
- 2RL1 · Crystal structure of UDP-N-acetylglucosamine enolpyruvyl transferase from Haemophilus… · the same entry in another collection · chain A against A, TM-score 1.00
- P45025 · AlphaFold monomer V2.0 prediction for udp-N-acetylglucosamine 1-carboxyvinyltransferase… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P45025
- Elsewhere: RCSB PDB 2RL1 · PDBe 2RL1 · UniProt P45025
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