Research workbench
Crystal structure of a putative apha-like transcription factor (ZP_00208345.1) from magnetospirillum magnetotacticum ms-1 at 2.00 a resolution
Analyse Crystal structure of a putative apha-like transcription factor (ZP_00208345.1)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2RKH
- Type
- protein
- Length
- 164 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative apha-like transcription factor
- Pockets
- 3 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 70% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative apha-like transcription factor | protein | 164 | 70% helix, 5% strand | — |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 264 | 0.51 | 0.74 | 24 | empty |
| 2 | 90 | 0.42 | 0.79 | 16 | empty |
| 3 | 137 | 0.38 | 0.73 | 17 | empty |
Modifications
Observed in the structure: 7 modified (engineered).
Compared structures
- 2RKH · Crystal structure of a putative AphA-like transcription factor (ZP_00208345.1) from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2RKH · PDBe 2RKH
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