Research workbench

Crystal structure of the headpiece domain of chicken villin, P61 space group

Analyse Crystal structure of the headpiece domain of chicken villin, P61 space group in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2RJX
Type: protein
Length: 131 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Villin-1
UniProt: P02640
Pockets: 1 · best druggability 0.43

Structure

x-ray diffraction · 2 distinct chains · 57% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Villin-1	protein	67	58% helix, 0% strand	P02640
B	Villin-1	protein	64	56% helix, 0% strand	P02640

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	55	0.43	0.83	17	empty

Interfaces

1 interface between chains.

A–B · 506 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

2RJX · Crystal structure of the headpiece domain of chicken villin, P61 space group · the same entry in another collection · chain A against A, TM-score 1.00
P02640 · AlphaFold monomer V2.0 prediction for villin-1 (P02640) · a predicted model of the same protein · chain B against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02640
Elsewhere: RCSB PDB 2RJX · PDBe 2RJX · UniProt P02640

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.