Research workbench
Azurin from pseudomonas aeruginosa, apo form
Analyse Azurin from pseudomonas aeruginosa, apo form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1E65
- Type
- protein
- Length
- 512 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Azurin
- UniProt
- P00282
- Pockets
- 5 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 19% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Azurin | protein | 128 | 19% helix, 34% strand | P00282 |
Pockets
5 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 256 | 0.73 | 0.87 | 30 | empty |
| 2 | 294 | 0.68 | 0.83 | 33 | empty |
| 3 | 75 | 0.67 | 0.94 | 21 | empty |
| 4 | 258 | 0.62 | 0.81 | 47 | empty |
| 5 | 273 | 0.62 | 0.80 | 48 | empty |
Interfaces
6 interfaces between chains.
- A–C · 519 Ų buried · 2 hydrogen bonds · protein-protein
- B–D · 497 Ų buried · 2 hydrogen bonds · protein-protein
- A–B · 414 Ų buried · 2 hydrogen bonds · protein-protein
- A–D · 414 Ų buried · 4 hydrogen bonds · protein-protein
- C–D · 389 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00282
- Elsewhere: RCSB PDB 1E65 · PDBe 1E65 · UniProt P00282
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