Research workbench

Crystal structure of a pyridoxamine 5'-phosphate oxidase related protein (PSYC_0186) from psychrobacter arcticus 273-4 at 2.50 a resolution

Analyse Crystal structure of a pyridoxamine 5'-phosphate oxidase related protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2RE7
Type: protein
Length: 132 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein
UniProt: Q4FV99
Ligands: SO4
Pockets: 2 · best druggability 0.45

Structure

x-ray diffraction · 1 distinct chain · 25% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein	protein	132	25% helix, 39% strand	Q4FV99

Ligands and binding sites

SO4 · Sulfate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	91	0.45	0.80	16	SO4
2	69	0.28	0.72	15	empty

Modifications

Observed in the structure: 2 modified (engineered).

Compared structures

2RE7 · Crystal structure of a pyridoxamine 5'-phosphate oxidase related protein (psyc_0186) from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q4FV99
Elsewhere: RCSB PDB 2RE7 · PDBe 2RE7 · UniProt Q4FV99

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.