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X-ray structure of the protein Q7CQI7. northeast structural genomics consortium target STR87A

Analyse X-ray structure of the protein Q7CQI7. northeast structural genomics consortium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2RD1
Type: protein
Length: 173 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative outer membrane lipoprotein
UniProt: Q7CQI7
Pockets: 1 · best druggability 0.63

Structure

x-ray diffraction · 2 distinct chains · 5% helix, 52% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative outer membrane lipoprotein	protein	57	5% helix, 53% strand	Q7CQI7
B, C	Putative outer membrane lipoprotein	protein	58	5% helix, 52% strand	Q7CQI7

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	388	0.63	0.78	49	empty

Interfaces

3 interfaces between chains.

A–B · 253 Å² buried · 3 hydrogen bonds · protein-protein
A–C · 247 Å² buried · 2 hydrogen bonds · protein-protein
B–C · 242 Å² buried · 3 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 6 modified (engineered).

Compared structures

2RD1 · X-Ray structure of the protein Q7CQI7. Northeast Structural Genomics Consortium target… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7CQI7
Elsewhere: RCSB PDB 2RD1 · PDBe 2RD1 · UniProt Q7CQI7

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