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X-ray crystallographic structures show conservation of a trigonal- bipyramidal intermediate in a phosphoryl-transfer superfamily.

Analyse X-ray crystallographic structures show conservation of a trigonal- bipyramidal… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2RBK
Type: protein
Length: 261 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative uncharacterized protein
UniProt: Q8A090
Ligands: VN4, MG
Pockets: 1 · best druggability 0.30

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative uncharacterized protein	protein	261	40% helix, 21% strand	Q8A090

Ligands and binding sites

VN4 · oxido(dioxo)vanadium · ligand · chains A
MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	72	0.30	0.73	15	empty

Compared structures

2RBK · X-ray Crystallographic Structures Show Conservation of a Trigonal-Bipyramidal… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8A090
Elsewhere: RCSB PDB 2RBK · PDBe 2RBK · UniProt Q8A090

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