Research workbench

Crystal structure of the succinoglycan biosynthesis protein. northeast structural genomics consortium target BCR135

Analyse Crystal structure of the succinoglycan biosynthesis protein. northeast… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2RAD
Type: protein
Length: 808 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Succinoglycan biosynthesis protein
UniProt: Q81BN2
Pockets: 9 · best druggability 0.68

Structure

x-ray diffraction · 2 distinct chains · 47% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Succinoglycan biosynthesis protein	protein	403	48% helix, 16% strand	Q81BN2
B	Succinoglycan biosynthesis protein	protein	405	47% helix, 17% strand	Q81BN2

Pockets

9 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	653	0.68	0.76	51	empty
2	330	0.61	0.78	30	empty
3	322	0.59	0.77	31	empty
4	432	0.58	0.74	41	empty
5	58	0.40	0.81	14	empty

Interfaces

1 interface between chains.

A–B · 486 Å² buried · 7 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 16 modified (engineered).

Compared structures

2RAD · Crystal structure of the succinoglycan biosynthesis protein. Northeast structural… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q81BN2
Elsewhere: RCSB PDB 2RAD · PDBe 2RAD · UniProt Q81BN2

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.