Research workbench
X-ray structure of the Q7CPV8 protein from salmonella typhimurium at the resolution 1.9 a. northeast structural genomics consortium target STR88A
Analyse X-ray structure of the Q7CPV8 protein from salmonella typhimurium at the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2RA2
- Type
- protein
- Length
- 330 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative lipoprotein
- UniProt
- Q7CPV8
- Pockets
- 2 · best druggability 0.66
Structure
x-ray diffraction · 6 distinct chains · 5% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative lipoprotein | protein | 55 | 5% helix, 44% strand | Q7CPV8 |
| B | Putative lipoprotein | protein | 59 | 5% helix, 46% strand | Q7CPV8 |
| C | Putative lipoprotein | protein | 55 | 5% helix, 49% strand | Q7CPV8 |
| D | Putative lipoprotein | protein | 55 | 5% helix, 51% strand | Q7CPV8 |
| E | Putative lipoprotein | protein | 53 | 6% helix, 49% strand | Q7CPV8 |
| F | Putative lipoprotein | protein | 53 | 6% helix, 51% strand | Q7CPV8 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 729 | 0.66 | 0.75 | 71 | empty |
| 2 | 267 | 0.51 | 0.74 | 35 | empty |
Interfaces
9 interfaces between chains.
- A–F · 604 Ų buried · 18 hydrogen bonds · protein-protein
- C–D · 567 Ų buried · 15 hydrogen bonds · protein-protein
- B–F · 561 Ų buried · 13 hydrogen bonds · protein-protein
- C–E · 540 Ų buried · 15 hydrogen bonds · protein-protein
- B–C · 120 Ų buried · 2 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 19 modified (engineered).
Compared structures
- 2RA2 · X-Ray structure of the Q7CPV8 protein from Salmonella typhimurium at the resolution 1.9… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7CPV8
- Elsewhere: RCSB PDB 2RA2 · PDBe 2RA2 · UniProt Q7CPV8
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