Research workbench
Crystal structure of VP1 apoenzyme of rotavirus SA11 (C-terminal hexahistidine-tagged)
Analyse Crystal structure of VP1 apoenzyme of rotavirus SA11 (C-terminal… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2R7Q
- Type
- protein
- Length
- 1,072 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA-dependent RNA polymerase
- UniProt
- O37061
- Pockets
- 14 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 54% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA-dependent RNA polymerase | protein | 1072 | 54% helix, 12% strand | O37061 |
Pockets
14 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 734 | 0.77 | 0.82 | 77 | empty |
| 2 | 271 | 0.73 | 0.87 | 40 | empty |
| 3 | 379 | 0.66 | 0.79 | 32 | empty |
| 4 | 295 | 0.64 | 0.81 | 41 | empty |
| 5 | 148 | 0.60 | 0.84 | 26 | empty |
Compared structures
- 2R7Q · Crystal Structure of VP1 apoenzyme of Rotavirus SA11 (C-terminal hexahistidine-tagged) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O37061
- Elsewhere: RCSB PDB 2R7Q · PDBe 2R7Q · UniProt O37061
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