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Crystal structure of ribonuclease II family protein from deinococcus radiodurans, hexagonal crystal form. northeast structural genomics target DRR63
Analyse Crystal structure of ribonuclease II family protein from deinococcus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2R7F
- Type
- protein
- Length
- 459 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribonuclease II family protein
- UniProt
- Q9RYD0
- Pockets
- 3 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribonuclease II family protein | protein | 459 | 34% helix, 25% strand | Q9RYD0 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 821 | 0.73 | 0.78 | 74 | empty |
| 2 | 137 | 0.46 | 0.77 | 17 | empty |
| 3 | 84 | 0.44 | 0.80 | 16 | empty |
Modifications
Observed in the structure: 9 modified (engineered).
Compared structures
- 2R7F · Crystal structure of ribonuclease II family protein from Deinococcus radiodurans… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RYD0
- Elsewhere: RCSB PDB 2R7F · PDBe 2R7F · UniProt Q9RYD0
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