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Crystal structure of infectious bursal disease virus VP1 polymerase, cocrystallized with an oligopeptide mimicking the VP3 C-terminus.
Analyse Crystal structure of infectious bursal disease virus VP1 polymerase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2R70
- Type
- protein
- Length
- 752 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Infectious bursal virus VP1 polymerase
- UniProt
- Q9Q6Q5
- Pockets
- 14 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Infectious bursal virus VP1 polymerase | protein | 752 | 46% helix, 15% strand | Q9Q6Q5 |
Pockets
14 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 489 | 0.63 | 0.76 | 53 | empty |
| 2 | 140 | 0.59 | 0.84 | 22 | empty |
| 3 | 151 | 0.57 | 0.82 | 26 | empty |
| 4 | 193 | 0.53 | 0.78 | 32 | empty |
| 5 | 102 | 0.51 | 0.82 | 24 | empty |
Compared structures
- 2R70 · Crystal structure of infectious bursal disease virus VP1 polymerase, cocrystallized with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Q6Q5
- Elsewhere: RCSB PDB 2R70 · PDBe 2R70 · UniProt Q9Q6Q5
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