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Complex structure of sucrose phosphate synthase (sps)-S6P of halothermothrix orenii

Analyse Complex structure of sucrose phosphate synthase (sps)-S6P of halothermothrix… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2R68
Type: protein
Length: 456 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glycosyl transferase, group 1
EC: 2.4.1.14
UniProt: Q2ADF5
Ligands: F6P, GLC
Pockets: 3 · best druggability 0.34

Structure

x-ray diffraction · 1 distinct chain · 48% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glycosyl transferase, group 1 (EC 2.4.1.14)	protein	456	48% helix, 15% strand	Q2ADF5

Ligands and binding sites

F6P · 6-O-phosphono-beta-D-fructofuranose · ligand · chains A
GLC · alpha-D-glucopyranose · sugar · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	66	0.34	0.76	18	empty
2	74	0.33	0.75	20	empty
3	76	0.30	0.73	24	empty

Compared structures

2R68 · Complex Structure of Sucrose Phosphate Synthase (SPS)-S6P of Halothermothrix orenii · the same entry in another collection · chain A against A, TM-score 1.00

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Every structure of UniProt Q2ADF5
Elsewhere: RCSB PDB 2R68 · PDBe 2R68 · UniProt Q2ADF5

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