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Human star-related lipid transfer protein 5

Analyse Human star-related lipid transfer protein 5 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2R55
Type: protein
Length: 416 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Star-related lipid transfer protein 5
UniProt: Q9NSY2
Pockets: 3 · best druggability 0.84

Structure

x-ray diffraction · 1 distinct chain · 28% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Star-related lipid transfer protein 5	protein	208	28% helix, 36% strand	Q9NSY2

Pockets

3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	222	0.84	0.96	39	empty
2	223	0.83	0.96	35	empty
3	591	0.75	0.82	65	empty

Interfaces

1 interface between chains.

A–B · 622 Å² buried · 12 hydrogen bonds · protein-protein

Compared structures

2R55 · Human StAR-related lipid transfer protein 5 · the same entry in another collection · chain A against A, TM-score 1.00
Q9NSY2 · AlphaFold monomer V2.0 prediction for star-related lipid transfer protein 5 (Q9NSY2) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9NSY2
Elsewhere: RCSB PDB 2R55 · PDBe 2R55 · UniProt Q9NSY2

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