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Crystal structure of a domain of the outer membrane lipoprotein OMP28 from porphyromonas gingivalis

Analyse Crystal structure of a domain of the outer membrane lipoprotein OMP28 from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2R2C
Type: protein
Length: 230 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 28 kda outer membrane protein OMP28
UniProt: Q9S3Q1
Pockets: 1 · best druggability 0.53

Structure

x-ray diffraction · 2 distinct chains · 3% helix, 57% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	28 kda outer membrane protein OMP28	protein	121	2% helix, 55% strand	Q9S3Q1
B	28 kda outer membrane protein OMP28	protein	109	3% helix, 59% strand	Q9S3Q1

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	87	0.53	0.84	23	empty

Interfaces

1 interface between chains.

A–B · 884 Å² buried · 9 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

2R2C · Crystal structure of a domain of the outer membrane lipoprotein Omp28 from Porphyromonas… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9S3Q1
Elsewhere: RCSB PDB 2R2C · PDBe 2R2C · UniProt Q9S3Q1

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