Research workbench
Crystal structure of unknown function protein MMP1188
Analyse Crystal structure of unknown function protein MMP1188 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2QZG
- Type
- protein
- Length
- 352 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Conserved uncharacterized archaeal protein
- UniProt
- Q6LY05
- Pockets
- 4 · best druggability 0.83
Structure
x-ray diffraction · 4 distinct chains · 67% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Conserved uncharacterized archaeal protein | protein | 88 | 67% helix, 0% strand | Q6LY05 |
| B | Conserved uncharacterized archaeal protein | protein | 90 | 66% helix, 0% strand | Q6LY05 |
| C | Conserved uncharacterized archaeal protein | protein | 89 | 66% helix, 0% strand | Q6LY05 |
| D | Conserved uncharacterized archaeal protein | protein | 85 | 68% helix, 0% strand | Q6LY05 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 996 | 0.83 | 0.84 | 78 | empty |
| 2 | 130 | 0.51 | 0.81 | 20 | empty |
| 3 | 143 | 0.43 | 0.75 | 24 | empty |
| 4 | 100 | 0.38 | 0.76 | 19 | empty |
Interfaces
5 interfaces between chains.
- B–D · 821 Ų buried · 4 hydrogen bonds · protein-protein
- A–C · 786 Ų buried · 7 hydrogen bonds · protein-protein
- A–B · 517 Ų buried · 6 hydrogen bonds · protein-protein
- C–D · 503 Ų buried · 9 hydrogen bonds · protein-protein
- B–C · 10 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 2QZG · Crystal structure of unknown function protein MMP1188 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6LY05
- Elsewhere: RCSB PDB 2QZG · PDBe 2QZG · UniProt Q6LY05
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