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The crystal structure of a homologue of telluride resistance protein (terd), SCO6318 from streptomyces coelicolor A3(2)
Analyse The crystal structure of a homologue of telluride resistance protein (terd)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2QZ7
- Type
- protein
- Length
- 341 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein SCO6318
- UniProt
- Q93RS6
- Ligands
- NA
- Pockets
- 2 · best druggability 0.38
Structure
x-ray diffraction · 2 distinct chains · 9% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein SCO6318 | protein | 172 | 9% helix, 42% strand | Q93RS6 |
| B | Uncharacterized protein SCO6318 | protein | 169 | 9% helix, 43% strand | Q93RS6 |
Ligands and binding sites
- NA · Sodium ion · metal · 7 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 109 | 0.38 | 0.75 | 25 | empty |
| 2 | 87 | 0.33 | 0.74 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 480 Ų buried · 9 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 2QZ7 · The crystal structure of a homologue of telluride resistance protein (TerD), SCO6318 from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q93RS6
- Elsewhere: RCSB PDB 2QZ7 · PDBe 2QZ7 · UniProt Q93RS6
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