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Crystal structure of a dimeric ferredoxin-like protein (BB1511) from bordetella bronchiseptica RB50 at 1.90 a resolution
Analyse Crystal structure of a dimeric ferredoxin-like protein (BB1511) from bordetella… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2QYC
- Type
- protein
- Length
- 204 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ferredoxin-like protein
- UniProt
- Q7WM81
- Ligands
- CL
- Pockets
- 2 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Ferredoxin-like protein | protein | 102 | 36% helix, 37% strand | Q7WM81 |
Ligands and binding sites
- CL · Chloride ion · ion · chains B
- EDO · 1,2-ethanediol · additive · 2 copies · chains A, B
- ACT · Acetate ion · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 103 | 0.54 | 0.83 | 20 | EDO |
| 2 | 154 | 0.48 | 0.77 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 1252 Ų buried · 12 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 14 modified, 2 disulfide (engineered, disulfide).
Compared structures
- 2QYC · Crystal structure of a dimeric ferredoxin-like protein (bb1511) from bordetella… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7WM81
- Elsewhere: RCSB PDB 2QYC · PDBe 2QYC · UniProt Q7WM81
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