Research workbench
Structure of a hoogsteen antiparallel duplex with extra-helical thymines
Analyse Structure of a hoogsteen antiparallel duplex with extra-helical thymines in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2QS6
- Type
- DNA
- Length
- 110 nucleotides
- Chains
- 14
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*DAP*DTP*DAP*DTP*DAP*DTP*DCP*DT)-3')
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, G, H, J, K, L, M, N | DNA (5'-D(*DAP*DTP*DAP*DTP*DAP*DTP*DCP*DT)-3') | dna | 8 | — | — |
| F, I | DNA (5'-D(*DAP*DTP*DAP*DTP*DAP*DTP*DCP*DT)-3') | dna | 7 | — | — |
Interfaces
25 interfaces between chains.
- A–B · 436 Ų buried · 29 hydrogen bonds · nucleic-nucleic
- M–N · 436 Ų buried · 35 hydrogen bonds · nucleic-nucleic
- G–H · 433 Ų buried · 29 hydrogen bonds · nucleic-nucleic
- C–D · 432 Ų buried · 28 hydrogen bonds · nucleic-nucleic
- K–L · 429 Ų buried · 34 hydrogen bonds · nucleic-nucleic
Compared structures
- 2QS6 · Structure of a Hoogsteen antiparallel duplex with extra-helical thymines · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2QS6 · PDBe 2QS6
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