Research workbench
Crystal structure of putative glyoxalase family protein from bacillus anthracis
Analyse Crystal structure of putative glyoxalase family protein from bacillus anthracis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2QQZ
- Type
- protein
- Length
- 245 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glyoxalase family protein, putative
- UniProt
- Q81Y56
- Ligands
- SO4
- Pockets
- 3 · best druggability 0.72
Structure
x-ray diffraction · 2 distinct chains · 22% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glyoxalase family protein, putative | protein | 123 | 22% helix, 39% strand | Q81Y56 |
| B | Glyoxalase family protein, putative | protein | 122 | 22% helix, 40% strand | Q81Y56 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 237 | 0.72 | 0.87 | 35 | SO4 |
| 2 | 115 | 0.51 | 0.81 | 23 | SO4, GOL |
| 3 | 59 | 0.50 | 0.86 | 20 | SO4 |
Interfaces
1 interface between chains.
- A–B · 2306 Ų buried · 32 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 2QQZ · Crystal structure of putative glyoxalase family protein from Bacillus anthracis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q81Y56
- Elsewhere: RCSB PDB 2QQZ · PDBe 2QQZ · UniProt Q81Y56
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