Research workbench
Crystal structure of novel immune-type receptor 11 extracellular fragment from ictalurus punctatus
Analyse Crystal structure of novel immune-type receptor 11 extracellular fragment from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2QQQ
- Type
- protein
- Length
- 436 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Novel immune-type receptor 11
- UniProt
- Q8UWK4
- Pockets
- 5 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Novel immune-type receptor 11 | protein | 109 | 6% helix, 51% strand | Q8UWK4 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 481 | 0.67 | 0.79 | 51 | empty |
| 2 | 121 | 0.50 | 0.80 | 24 | empty |
| 3 | 128 | 0.49 | 0.80 | 32 | empty |
| 4 | 94 | 0.40 | 0.77 | 14 | empty |
| 5 | 56 | 0.29 | 0.75 | 13 | empty |
Interfaces
5 interfaces between chains.
- A–B · 1257 Ų buried · 11 hydrogen bonds · protein-protein
- C–D · 1241 Ų buried · 10 hydrogen bonds · protein-protein
- A–C · 333 Ų buried · 4 hydrogen bonds · protein-protein
- B–D · 313 Ų buried · 5 hydrogen bonds · protein-protein
- B–C · 217 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 2QQQ · Crystal Structure of Novel Immune-Type Receptor 11 Extracellular Fragment from Ictalurus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8UWK4
- Elsewhere: RCSB PDB 2QQQ · PDBe 2QQQ · UniProt Q8UWK4
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