Research workbench
Crystal structure of a putative redox protein (LSEI_0423) from lactobacillus casei atcc 334 at 1.50 a resolution
Analyse Crystal structure of a putative redox protein (LSEI_0423) from lactobacillus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2QL8
- Type
- protein
- Length
- 282 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative redox protein
- UniProt
- Q03BZ3
- Ligands
- BEZ
- Pockets
- 2 · best druggability 0.63
Structure
x-ray diffraction · 2 distinct chains · 34% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative redox protein | protein | 141 | 33% helix, 32% strand | Q03BZ3 |
| B | Putative redox protein | protein | 141 | 35% helix, 32% strand | Q03BZ3 |
Ligands and binding sites
- BEZ · Benzoic acid · ligand · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 9 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 197 | 0.63 | 0.83 | 28 | BEZ, EDO |
| 2 | 181 | 0.62 | 0.83 | 23 | EDO, BEZ |
Interfaces
1 interface between chains.
- A–B · 3321 Ų buried · 51 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 2QL8 · Crystal structure of a putative redox protein (lsei_0423) from lactobacillus casei atcc… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q03BZ3
- Elsewhere: RCSB PDB 2QL8 · PDBe 2QL8 · UniProt Q03BZ3
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