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Crystal structure of infectious bursal disease virus VP1 polymerase incubated with an oligopeptide mimicking the VP3 C-terminus
Analyse Crystal structure of infectious bursal disease virus VP1 polymerase incubated… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2QJ1
- Type
- protein
- Length
- 767 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Infectious bursal disease virus VP1 polymerase
- UniProt
- Q82629
- Pockets
- 15 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Infectious bursal disease virus VP1 polymerase | protein | 767 | 43% helix, 14% strand | Q82629 |
Pockets
15 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 117 | 0.67 | 0.90 | 25 | empty |
| 2 | 515 | 0.64 | 0.76 | 55 | empty |
| 3 | 176 | 0.57 | 0.81 | 24 | empty |
| 4 | 303 | 0.57 | 0.76 | 40 | empty |
| 5 | 95 | 0.55 | 0.85 | 21 | empty |
Compared structures
- 2QJ1 · Crystal structure of infectious bursal disease virus VP1 polymerase incubated with an… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q82629
- Elsewhere: RCSB PDB 2QJ1 · PDBe 2QJ1 · UniProt Q82629
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