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Crystal structure of SER49-PLA2 (ecarpholin S) from echis carinatus sochureki snake venom
Analyse Crystal structure of SER49-PLA2 (ecarpholin S) from echis carinatus sochureki… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2QHE
- Type
- protein
- Length
- 122 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phospholipase A2
- EC
- 3.1.1.4
- UniProt
- P48650
- Pockets
- 1 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phospholipase A2 (EC 3.1.1.4) | protein | 122 | 47% helix, 8% strand | P48650 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 140 | 0.55 | 0.81 | 19 | empty |
Modifications
Observed in the structure: 7 disulfide (disulfide).
Compared structures
- 2QHE · Crystal structure of Ser49-PLA2 (ecarpholin S) from Echis carinatus sochureki snake venom · the same entry in another collection · chain A against A, TM-score 1.00
- P48650 · AlphaFold monomer V2.0 prediction for basic phospholipase A2 homolog ecarpholin S (P48650) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P48650
- Elsewhere: RCSB PDB 2QHE · PDBe 2QHE · UniProt P48650
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