Research workbench
Crystal structure of an enolase from the environmental genome shotgun sequencing of the sargasso sea
Analyse Crystal structure of an enolase from the environmental genome shotgun… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2QGY
- Type
- protein
- Length
- 751 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Enolase from the environmental genome shotgun sequencing of the sargasso sea
- Ligands
- MG
- Pockets
- 8 · best druggability 0.73
Structure
x-ray diffraction · 2 distinct chains · 42% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Enolase from the environmental genome shotgun sequencing of the sargasso sea | protein | 376 | 42% helix, 19% strand | — |
| B | Enolase from the environmental genome shotgun sequencing of the sargasso sea | protein | 375 | 42% helix, 20% strand | — |
Ligands and binding sites
- MG · Magnesium ion · metal · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 93 | 0.73 | 0.96 | 15 | empty |
| 2 | 577 | 0.71 | 0.79 | 69 | empty |
| 3 | 340 | 0.63 | 0.79 | 40 | empty |
| 4 | 383 | 0.62 | 0.77 | 49 | empty |
| 5 | 126 | 0.42 | 0.76 | 24 | empty |
Interfaces
1 interface between chains.
- A–B · 1730 Ų buried · 26 hydrogen bonds · protein-protein
Compared structures
- 2QGY · Crystal structure of an enolase from the environmental genome shotgun sequencing of the… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2QGY · PDBe 2QGY
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