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Structure of the mutant S211A of the ribosome inactivating protein PDL4 from P. dioica in complex with adenine
Analyse Structure of the mutant S211A of the ribosome inactivating protein PDL4 from P.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2QET
- Type
- protein
- Length
- 261 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribosome-inactivating protein pd-L4
- EC
- 3.2.2.22
- UniProt
- P84854
- Ligands
- ADE
- Pockets
- 1 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosome-inactivating protein pd-L4 (EC 3.2.2.22) | protein | 261 | 39% helix, 24% strand | P84854 |
Ligands and binding sites
- ADE · Adenine · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 65 | 0.44 | 0.82 | 18 | ADE |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 2QET · Structure of the mutant S211A of the ribosome inactivating protein PDL4 from P. dioica in… · the same entry in another collection · chain A against A, TM-score 1.00
- P84854 · AlphaFold monomer V2.0 prediction for ribosome-inactivating protein pd-L3/PD-L4 (P84854) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P84854
- Elsewhere: RCSB PDB 2QET · PDBe 2QET · UniProt P84854
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