Research workbench
The walker-type ATPase PABY2304 of pyrococcus abyssi
Analyse The walker-type ATPase PABY2304 of pyrococcus abyssi in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2QEN
- Type
- protein
- Length
- 350 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Walker-type ATPase
- UniProt
- Q9V2L3
- Ligands
- ADP, MG
- Pockets
- 3 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 59% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Walker-type ATPase | protein | 350 | 59% helix, 11% strand | Q9V2L3 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 551 | 0.74 | 0.82 | 51 | MG, ADP |
| 2 | 176 | 0.47 | 0.75 | 18 | empty |
| 3 | 83 | 0.33 | 0.74 | 18 | empty |
Compared structures
- 2QEN · The walker-type atpase paby2304 of pyrococcus abyssi · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9V2L3
- Elsewhere: RCSB PDB 2QEN · PDBe 2QEN · UniProt Q9V2L3
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