Research workbench
X-ray structure of 7-deaza-dg and Z3DU modified duplex cgcgaatxczcg
Analyse X-ray structure of 7-deaza-dg and Z3DU modified duplex cgcgaatxczcg in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2QEF
- Type
- DNA
- Length
- 24 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*(ZDU) P*DCP*(7GU)P*DCP*DG)-3')
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*(ZDU) P*DCP*(7GU)P*DCP*DG)-3') | dna | 12 | — | — |
Interfaces
1 interface between chains.
- A–B · 589 Ų buried · 46 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 4 modified (nucleotide modification).
Compared structures
- 2QEF · X-ray structure of 7-deaza-dG and Z3dU modified duplex CGCGAATXCZCG · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2QEF · PDBe 2QEF
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