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Crystal structure of a DUF416 family protein (SBAL_3149) from shewanella baltica OS155 at 1.91 a resolution

Analyse Crystal structure of a DUF416 family protein (SBAL_3149) from shewanella… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2Q9R
Type: protein
Length: 195 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein of unknown function
UniProt: A3D7B7
Ligands: BEZ, SO4
Pockets: 2 · best druggability 0.32

Structure

x-ray diffraction · 1 distinct chain · 74% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein of unknown function	protein	195	74% helix, 0% strand	A3D7B7

Ligands and binding sites

BEZ · Benzoic acid · ligand · chains A
SO4 · Sulfate ion · ion · 2 copies · chains A
GOL · Glycerol · additive · 6 copies · chains A
ACT · Acetate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	76	0.32	0.74	18	GOL
2	56	0.32	0.76	10	GOL

Modifications

Observed in the structure: 3 modified (engineered).

Compared structures

2Q9R · CRYSTAL STRUCTURE OF a DUF416 family protein (SBAL_3149) FROM SHEWANELLA BALTICA OS155 AT… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A3D7B7
Elsewhere: RCSB PDB 2Q9R · PDBe 2Q9R · UniProt A3D7B7

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