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Crystal structure of imazg from vibrio dat 722: ntag-imazg (P43212)

Analyse Crystal structure of imazg from vibrio dat 722: ntag-imazg (P43212) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2Q5Z
Type: protein
Length: 187 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein
EC: 3.6.1.19
UniProt: Q2F9Z1
Ligands: MG
Pockets: 2 · best druggability 0.38

Structure

x-ray diffraction · 2 distinct chains · 73% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein (EC 3.6.1.19)	protein	93	73% helix, 1% strand	Q2F9Z1
B	Hypothetical protein (EC 3.6.1.19)	protein	94	72% helix, 1% strand	Q2F9Z1

Ligands and binding sites

MG · Magnesium ion · metal · 2 copies · chains A, B
GOL · Glycerol · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	115	0.38	0.74	14	GOL
2	83	0.33	0.74	16	empty

Interfaces

1 interface between chains.

A–B · 2064 Å² buried · 16 hydrogen bonds · protein-protein

Compared structures

2Q5Z · Crystal structure of iMazG from Vibrio DAT 722: Ntag-iMazG (P43212) · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q2F9Z1
Elsewhere: RCSB PDB 2Q5Z · PDBe 2Q5Z · UniProt Q2F9Z1

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