Research workbench
Crystal structure of ntrc family transcriptional regulator from clostridium acetobutylicum
Analyse Crystal structure of ntrc family transcriptional regulator from clostridium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2Q5C
- Type
- protein
- Length
- 374 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ntrc family transcriptional regulator
- UniProt
- Q97LU5
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D | Ntrc family transcriptional regulator | protein | 187 | 51% helix, 23% strand | Q97LU5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1097 | 0.81 | 0.83 | 109 | GOL, SO4 |
Interfaces
1 interface between chains.
- A–D · 630 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 2Q5C · Crystal structure of NtrC family transcriptional regulator from Clostridium acetobutylicum · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q97LU5
- Elsewhere: RCSB PDB 2Q5C · PDBe 2Q5C · UniProt Q97LU5
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