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Ensemble refinement of the protein crystal structure of gene product from arabidopsis thaliana AT2G17340

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PDB: 2Q40
Type: protein
Length: 343 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein AT2G17340
UniProt: Q949P3
Ligands: MG
Pockets: 2 · best druggability 0.62

Structure

x-ray diffraction · 1 distinct chain · 46% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein AT2G17340	protein	343	46% helix, 13% strand	Q949P3

Ligands and binding sites

MG · Magnesium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	315	0.62	0.79	35	MG
2	59	0.33	0.76	16	empty

Compared structures

2Q40 · Ensemble refinement of the protein crystal structure of gene product from Arabidopsis… · the same entry in another collection · chain A against A, TM-score 1.00
Q949P3 · AlphaFold monomer V2.0 prediction for damage-control phosphatase AT2G17340 (Q949P3) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q949P3
Elsewhere: RCSB PDB 2Q40 · PDBe 2Q40 · UniProt Q949P3

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