Research workbench
Ensemble refinement of the protein crystal structure of an arabidopsis thaliana putative steroid sulphotransferase
Analyse Ensemble refinement of the protein crystal structure of an arabidopsis thaliana… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2Q3M
- Type
- protein
- Length
- 284 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flavonol sulfotransferase-like
- EC
- 2.8.2.-
- UniProt
- P52839
- Pockets
- 4 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Flavonol sulfotransferase-like (EC 2.8.2.-) | protein | 284 | 46% helix, 8% strand | P52839 |
Ligands and binding sites
- MLA · Malonic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 147 | 0.54 | 0.80 | 29 | MLA |
| 2 | 59 | 0.51 | 0.86 | 17 | empty |
| 3 | 102 | 0.42 | 0.77 | 24 | empty |
| 4 | 50 | 0.37 | 0.80 | 15 | empty |
Compared structures
- 2Q3M · Ensemble refinement of the protein crystal structure of an Arabidopsis thaliana putative… · the same entry in another collection · chain A against A, TM-score 1.00
- P52839 · AlphaFold monomer V2.0 prediction for cytosolic sulfotransferase 12 (P52839) · a predicted model of the same protein · chain A against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P52839
- Elsewhere: RCSB PDB 2Q3M · PDBe 2Q3M · UniProt P52839
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