Research workbench
Crystal structure of influenza a virus H5N1 nucleoprotein
Analyse Crystal structure of influenza a virus H5N1 nucleoprotein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2Q06
- Type
- protein
- Length
- 932 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nucleoprotein
- UniProt
- Q9PX50
- Pockets
- 15 · best druggability 0.80
Structure
x-ray diffraction · 2 distinct chains · 43% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoprotein | protein | 467 | 43% helix, 6% strand | Q9PX50 |
| B | Nucleoprotein | protein | 465 | 42% helix, 6% strand | Q9PX50 |
Pockets
15 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1101 | 0.80 | 0.81 | 95 | empty |
| 2 | 897 | 0.78 | 0.80 | 68 | empty |
| 3 | 848 | 0.78 | 0.81 | 65 | empty |
| 4 | 91 | 0.56 | 0.86 | 17 | empty |
| 5 | 50 | 0.51 | 0.87 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 896 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 2Q06 · Crystal structure of Influenza A Virus H5N1 Nucleoprotein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9PX50
- Elsewhere: RCSB PDB 2Q06 · PDBe 2Q06 · UniProt Q9PX50
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