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Crystal structure of the murray valley encephalitis virus NS5 2'-O methyltransferase domain in complex with sah (monoclinic form 2)

Analyse Crystal structure of the murray valley encephalitis virus NS5 2'-O… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2PX4
Type: protein
Length: 261 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Genome polyprotein [contains: capsid protein C (core protein)
EC: 2.7.7.48
UniProt: P05769
Ligands: SAH, UNX, SO4, CL
Pockets: 1 · best druggability 0.70

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Genome polyprotein [contains: capsid protein C (core protein) (EC 2.7.7.48)	protein	261	35% helix, 15% strand	P05769

Ligands and binding sites

SAH · S-adenosyl-L-homocysteine · ligand · chains A
UNX · Unknown atom or ion · ion · 9 copies · chains A
SO4 · Sulfate ion · ion · 7 copies · chains A
CL · Chloride ion · ion · 3 copies · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	545	0.70	0.79	60	CL, SO4, SAH

Compared structures

2PX4 · Crystal structure of the Murray Valley Encephalitis Virus NS5 2'-O Methyltransferase… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P05769
Elsewhere: RCSB PDB 2PX4 · PDBe 2PX4 · UniProt P05769

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