Research workbench
Crystal structures of the luciferase and green fluorescent protein from renilla reniformis
Analyse Crystal structures of the luciferase and green fluorescent protein from renilla… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2PSF
- Type
- protein
- Length
- 608 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Renilla-luciferin 2-monooxygenase
- EC
- 1.13.12.5
- UniProt
- P27652
- Pockets
- 5 · best druggability 0.76
Structure
x-ray diffraction · 2 distinct chains · 43% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Renilla-luciferin 2-monooxygenase (EC 1.13.12.5) | protein | 307 | 43% helix, 18% strand | P27652 |
| B | Renilla-luciferin 2-monooxygenase (EC 1.13.12.5) | protein | 301 | 42% helix, 19% strand | P27652 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 286 | 0.76 | 0.88 | 40 | empty |
| 2 | 341 | 0.75 | 0.86 | 38 | empty |
| 3 | 441 | 0.62 | 0.76 | 40 | empty |
| 4 | 78 | 0.38 | 0.79 | 15 | empty |
| 5 | 51 | 0.25 | 0.73 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 596 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 2PSF · Crystal Structures of the Luciferase and Green Fluorescent Protein from Renilla Reniformis · the same entry in another collection · chain A against A, TM-score 1.00
- P27652 · AlphaFold monomer V2.0 prediction for coelenterazine H 2-monooxygenase (P27652) · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P27652
- Elsewhere: RCSB PDB 2PSF · PDBe 2PSF · UniProt P27652
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